Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.96□□□□□ -0.33
RaraP11416 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RaraP11416 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.96□□□□□ -0.34
RaraP11416 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
RaraP11416 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RaraP11416 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
RaraP11416 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RaraP11416 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
RaraP11416 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
RaraP11416 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RaraP11416 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
RaraP11416 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
RaraP11416 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm5419-201ENSMUST00000119301 527 ntBASIC12.95□□□□□ -0.34
RaraP11416 Gm14441-201ENSMUST00000121960 540 ntBASIC12.95□□□□□ -0.34
RaraP11416 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC12.95□□□□□ -0.34
RaraP11416 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm18893-201ENSMUST00000198416 943 ntBASIC12.95□□□□□ -0.34
RaraP11416 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm7046-201ENSMUST00000221351 977 ntBASIC12.95□□□□□ -0.34
RaraP11416 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC12.95□□□□□ -0.34
RaraP11416 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RaraP11416 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
RaraP11416 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.94□□□□□ -0.34
RaraP11416 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
RaraP11416 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC12.94□□□□□ -0.34
RaraP11416 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.94□□□□□ -0.34
RaraP11416 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC12.94□□□□□ -0.34
RaraP11416 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Gm10608-202ENSMUST00000213924 676 ntBASIC12.94□□□□□ -0.34
RaraP11416 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
RaraP11416 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
RaraP11416 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC12.94□□□□□ -0.34
RaraP11416 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
RaraP11416 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RaraP11416 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
RaraP11416 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RaraP11416 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms