Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Osmr-201ENSMUST00000022746 5491 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hmgb3O54879 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Hmgb3O54879 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC9.9□□□□□ -0.83
Hmgb3O54879 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hmgb3O54879 Mical2-202ENSMUST00000050149 6669 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hmgb3O54879 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Hmgb3O54879 Zzef1-201ENSMUST00000069395 11150 ntAPPRIS P2 TSL 5 BASIC9.9□□□□□ -0.83
Hmgb3O54879 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Hmgb3O54879 Gm45496-201ENSMUST00000209918 2917 ntBASIC9.89□□□□□ -0.83
Hmgb3O54879 Erbin-203ENSMUST00000091269 6224 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Dhdh-201ENSMUST00000011526 5323 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Exoc5-207ENSMUST00000162175 12699 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Syt7-204ENSMUST00000223586 1344 ntBASIC9.89□□□□□ -0.83
Hmgb3O54879 Limch1-202ENSMUST00000101164 5192 ntAPPRIS P2 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Abca9-201ENSMUST00000044850 6384 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Olfr750-202ENSMUST00000216202 5789 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm15703-201ENSMUST00000120250 880 ntBASIC9.89□□□□□ -0.83
Hmgb3O54879 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm13123-201ENSMUST00000122173 492 ntBASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm5859-201ENSMUST00000165401 2324 ntBASIC9.89□□□□□ -0.83
Hmgb3O54879 Ptpre-204ENSMUST00000209979 4959 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Olfr130-203ENSMUST00000217390 5959 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Rassf9-202ENSMUST00000219445 5294 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Myh15-201ENSMUST00000168680 6340 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC9.89□□□□□ -0.83
Hmgb3O54879 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Hmgb3O54879 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Cacna1c-222ENSMUST00000190285 6585 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm38140-201ENSMUST00000193617 2755 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Frmpd1-201ENSMUST00000044773 4812 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Ppfibp1-202ENSMUST00000111623 4782 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Ctnnd1-221ENSMUST00000111695 6344 ntTSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm45011-201ENSMUST00000207620 2297 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm5863-201ENSMUST00000121760 1008 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Rmrp-201ENSMUST00000157463 271 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm26185-201ENSMUST00000157692 266 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm38114-201ENSMUST00000191877 1232 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm7558-201ENSMUST00000193221 1165 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm8099-201ENSMUST00000200510 742 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Cdk7-205ENSMUST00000225990 1159 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 AL732506.1-201ENSMUST00000226420 281 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm44699-201ENSMUST00000208229 5083 ntTSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 159.2 ms