Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.33■□□□□ 0.68
Trim3Q9R1R2 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim3Q9R1R2 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim3Q9R1R2 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim3Q9R1R2 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim3Q9R1R2 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim3Q9R1R2 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.31■□□□□ 0.68
Trim3Q9R1R2 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim3Q9R1R2 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim3Q9R1R2 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.31■□□□□ 0.68
Trim3Q9R1R2 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Trim3Q9R1R2 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Gm45102-201ENSMUST00000207427 857 ntBASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Rps24-207ENSMUST00000224568 714 ntBASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim3Q9R1R2 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim3Q9R1R2 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Gm9959-201ENSMUST00000068277 390 ntBASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim3Q9R1R2 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim3Q9R1R2 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim3Q9R1R2 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim3Q9R1R2 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim3Q9R1R2 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim3Q9R1R2 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim3Q9R1R2 Gm14117-201ENSMUST00000122417 843 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 913.7 ms