Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Scn11aQ9R053 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Scn11aQ9R053 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Scn11aQ9R053 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Scn11aQ9R053 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Scn11aQ9R053 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Scn11aQ9R053 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Scn11aQ9R053 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
Scn11aQ9R053 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
Scn11aQ9R053 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Scn11aQ9R053 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Scn11aQ9R053 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Scn11aQ9R053 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Scn11aQ9R053 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Scn11aQ9R053 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Scn11aQ9R053 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Scn11aQ9R053 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Scn11aQ9R053 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Scn11aQ9R053 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Scn11aQ9R053 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
Scn11aQ9R053 AC164883.3-201ENSMUST00000227396 1774 ntBASIC25.01■■□□□ 1.59
Scn11aQ9R053 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Scn11aQ9R053 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Scn11aQ9R053 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Scn11aQ9R053 Gm27011-201ENSMUST00000182352 972 ntBASIC25■■□□□ 1.59
Scn11aQ9R053 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC25■■□□□ 1.59
Scn11aQ9R053 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Scn11aQ9R053 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Scn11aQ9R053 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC25■■□□□ 1.59
Scn11aQ9R053 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Scn11aQ9R053 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
Scn11aQ9R053 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC25■■□□□ 1.59
Scn11aQ9R053 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC25■■□□□ 1.59
Scn11aQ9R053 Gm43530-201ENSMUST00000195920 274 ntBASIC24.99■■□□□ 1.59
Scn11aQ9R053 Gm43137-201ENSMUST00000198052 594 ntBASIC24.99■■□□□ 1.59
Scn11aQ9R053 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC24.98■■□□□ 1.59
Scn11aQ9R053 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
Scn11aQ9R053 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Scn11aQ9R053 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Scn11aQ9R053 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
Scn11aQ9R053 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Scn11aQ9R053 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
Scn11aQ9R053 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
Scn11aQ9R053 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
Scn11aQ9R053 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC24.97■■□□□ 1.59
Scn11aQ9R053 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Scn11aQ9R053 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Scn11aQ9R053 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Scn11aQ9R053 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Scn11aQ9R053 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
Scn11aQ9R053 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
Scn11aQ9R053 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.59
Scn11aQ9R053 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC24.95■■□□□ 1.59
Scn11aQ9R053 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.59
Scn11aQ9R053 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Scn11aQ9R053 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Scn11aQ9R053 AC112142.1-201ENSMUST00000228796 918 ntBASIC24.95■■□□□ 1.58
Scn11aQ9R053 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Scn11aQ9R053 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 Gm37415-201ENSMUST00000192265 2054 ntBASIC24.94■■□□□ 1.58
Scn11aQ9R053 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Scn11aQ9R053 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Scn11aQ9R053 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC24.93■■□□□ 1.58
Scn11aQ9R053 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC24.93■■□□□ 1.58
Scn11aQ9R053 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Scn11aQ9R053 Gm9207-201ENSMUST00000198773 1115 ntBASIC24.93■■□□□ 1.58
Scn11aQ9R053 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Scn11aQ9R053 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC24.93■■□□□ 1.58
Scn11aQ9R053 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Scn11aQ9R053 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC24.92■■□□□ 1.58
Scn11aQ9R053 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Scn11aQ9R053 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Scn11aQ9R053 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Scn11aQ9R053 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Scn11aQ9R053 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Scn11aQ9R053 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Scn11aQ9R053 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
Scn11aQ9R053 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Scn11aQ9R053 Gm43759-201ENSMUST00000196925 1261 ntBASIC24.91■■□□□ 1.58
Scn11aQ9R053 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Scn11aQ9R053 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC24.9■■□□□ 1.58
Scn11aQ9R053 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Scn11aQ9R053 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Scn11aQ9R053 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Scn11aQ9R053 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Scn11aQ9R053 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC24.9■■□□□ 1.58
Scn11aQ9R053 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Scn11aQ9R053 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Scn11aQ9R053 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC24.89■■□□□ 1.58
Scn11aQ9R053 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
Scn11aQ9R053 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC24.89■■□□□ 1.57
Scn11aQ9R053 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
Scn11aQ9R053 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
Scn11aQ9R053 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC24.89■■□□□ 1.57
Scn11aQ9R053 Gm43017-201ENSMUST00000198296 752 ntBASIC24.89■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms