Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Trub1Q8C0D0 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trub1Q8C0D0 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Trub1Q8C0D0 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trub1Q8C0D0 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Trub1Q8C0D0 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Trub1Q8C0D0 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trub1Q8C0D0 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Trub1Q8C0D0 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.39■■□□□ 1.01
Trub1Q8C0D0 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trub1Q8C0D0 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trub1Q8C0D0 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trub1Q8C0D0 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trub1Q8C0D0 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trub1Q8C0D0 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trub1Q8C0D0 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trub1Q8C0D0 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trub1Q8C0D0 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.37■■□□□ 1.01
Trub1Q8C0D0 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trub1Q8C0D0 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trub1Q8C0D0 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trub1Q8C0D0 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trub1Q8C0D0 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trub1Q8C0D0 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trub1Q8C0D0 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trub1Q8C0D0 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Trub1Q8C0D0 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.35■■□□□ 1.01
Trub1Q8C0D0 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Trub1Q8C0D0 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Gm5812-201ENSMUST00000061073 957 ntBASIC21.33■■□□□ 1.01
Trub1Q8C0D0 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trub1Q8C0D0 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trub1Q8C0D0 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.33■■□□□ 1
Trub1Q8C0D0 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trub1Q8C0D0 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.32■■□□□ 1
Trub1Q8C0D0 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.32■■□□□ 1
Trub1Q8C0D0 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trub1Q8C0D0 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trub1Q8C0D0 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trub1Q8C0D0 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.32■■□□□ 1
Trub1Q8C0D0 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trub1Q8C0D0 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trub1Q8C0D0 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.31■■□□□ 1
Trub1Q8C0D0 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trub1Q8C0D0 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trub1Q8C0D0 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trub1Q8C0D0 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.31■■□□□ 1
Trub1Q8C0D0 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trub1Q8C0D0 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trub1Q8C0D0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trub1Q8C0D0 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trub1Q8C0D0 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trub1Q8C0D0 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.3■■□□□ 1
Trub1Q8C0D0 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trub1Q8C0D0 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trub1Q8C0D0 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.29■■□□□ 1
Trub1Q8C0D0 Gm15820-201ENSMUST00000201566 728 ntBASIC21.29■■□□□ 1
Trub1Q8C0D0 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.29■■□□□ 1
Trub1Q8C0D0 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trub1Q8C0D0 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trub1Q8C0D0 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trub1Q8C0D0 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trub1Q8C0D0 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.28■■□□□ 1
Trub1Q8C0D0 Gm40881-201ENSMUST00000223397 166 ntBASIC21.28■■□□□ 1
Trub1Q8C0D0 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trub1Q8C0D0 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Trub1Q8C0D0 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trub1Q8C0D0 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trub1Q8C0D0 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trub1Q8C0D0 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trub1Q8C0D0 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trub1Q8C0D0 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trub1Q8C0D0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Trub1Q8C0D0 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trub1Q8C0D0 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trub1Q8C0D0 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Trub1Q8C0D0 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trub1Q8C0D0 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.26■□□□□ 0.99
Trub1Q8C0D0 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms