Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn3Q8BHH8 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Gm5812-201ENSMUST00000061073 957 ntBASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn3Q8BHH8 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn3Q8BHH8 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Clrn3Q8BHH8 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 Gm10399-202ENSMUST00000202768 748 ntBASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn3Q8BHH8 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Clrn3Q8BHH8 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn3Q8BHH8 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn3Q8BHH8 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn3Q8BHH8 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn3Q8BHH8 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms