Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.34■□□□□ 0.85
Ubp1Q811S7 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ubp1Q811S7 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.33■□□□□ 0.85
Ubp1Q811S7 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Ubp1Q811S7 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.33■□□□□ 0.85
Ubp1Q811S7 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Ubp1Q811S7 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ubp1Q811S7 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ubp1Q811S7 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ubp1Q811S7 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ubp1Q811S7 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ubp1Q811S7 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
Ubp1Q811S7 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ubp1Q811S7 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Ubp1Q811S7 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ubp1Q811S7 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ubp1Q811S7 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ubp1Q811S7 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ubp1Q811S7 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ubp1Q811S7 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ubp1Q811S7 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.3■□□□□ 0.84
Ubp1Q811S7 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ubp1Q811S7 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ubp1Q811S7 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.29■□□□□ 0.84
Ubp1Q811S7 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ubp1Q811S7 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.28■□□□□ 0.84
Ubp1Q811S7 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ubp1Q811S7 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ubp1Q811S7 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.27■□□□□ 0.84
Ubp1Q811S7 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ubp1Q811S7 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Ubp1Q811S7 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ubp1Q811S7 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ubp1Q811S7 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ubp1Q811S7 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ubp1Q811S7 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ubp1Q811S7 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.23■□□□□ 0.83
Ubp1Q811S7 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ubp1Q811S7 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ubp1Q811S7 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Ubp1Q811S7 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms