Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Smarca1Q6PGB8 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Smarca1Q6PGB8 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Smarca1Q6PGB8 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Smarca1Q6PGB8 AC116713.1-201ENSMUST00000215074 430 ntBASIC23.03■■□□□ 1.28
Smarca1Q6PGB8 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC23.03■■□□□ 1.28
Smarca1Q6PGB8 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC23.02■■□□□ 1.28
Smarca1Q6PGB8 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Smarca1Q6PGB8 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Smarca1Q6PGB8 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Smarca1Q6PGB8 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Smarca1Q6PGB8 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Smarca1Q6PGB8 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC23■■□□□ 1.27
Smarca1Q6PGB8 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Smarca1Q6PGB8 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Smarca1Q6PGB8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC23■■□□□ 1.27
Smarca1Q6PGB8 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Smarca1Q6PGB8 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Smarca1Q6PGB8 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Smarca1Q6PGB8 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Smarca1Q6PGB8 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
Smarca1Q6PGB8 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Smarca1Q6PGB8 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Smarca1Q6PGB8 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Smarca1Q6PGB8 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Smarca1Q6PGB8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.96■■□□□ 1.27
Smarca1Q6PGB8 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC22.96■■□□□ 1.27
Smarca1Q6PGB8 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.27
Smarca1Q6PGB8 Gm22238-201ENSMUST00000175222 88 ntBASIC22.95■■□□□ 1.26
Smarca1Q6PGB8 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Smarca1Q6PGB8 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Smarca1Q6PGB8 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Smarca1Q6PGB8 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Smarca1Q6PGB8 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Gm44949-201ENSMUST00000206423 1450 ntBASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.93■■□□□ 1.26
Smarca1Q6PGB8 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
Smarca1Q6PGB8 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Smarca1Q6PGB8 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Smarca1Q6PGB8 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Smarca1Q6PGB8 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.9■■□□□ 1.26
Smarca1Q6PGB8 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
Smarca1Q6PGB8 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms