Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Upf3aQ3ULJ3 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Gm43173-201ENSMUST00000202246 593 ntBASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Upf3aQ3ULJ3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Upf3aQ3ULJ3 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Upf3aQ3ULJ3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.1
Upf3aQ3ULJ3 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.89■■□□□ 1.09
Upf3aQ3ULJ3 Gm12251-201ENSMUST00000117893 792 ntBASIC21.89■■□□□ 1.09
Upf3aQ3ULJ3 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Upf3aQ3ULJ3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.88■■□□□ 1.09
Upf3aQ3ULJ3 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Upf3aQ3ULJ3 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Gm43530-201ENSMUST00000195920 274 ntBASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3aQ3ULJ3 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3aQ3ULJ3 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.84■■□□□ 1.09
Upf3aQ3ULJ3 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3aQ3ULJ3 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3aQ3ULJ3 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Upf3aQ3ULJ3 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3aQ3ULJ3 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3aQ3ULJ3 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3aQ3ULJ3 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms