Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm5576-201ENSMUST00000075809 1236 ntBASIC17.65■□□□□ 0.42
Col8a1Q00780 Gm10493-201ENSMUST00000097270 612 ntBASIC17.65■□□□□ 0.42
Col8a1Q00780 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col8a1Q00780 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Col8a1Q00780 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Col8a1Q00780 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.64■□□□□ 0.41
Col8a1Q00780 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col8a1Q00780 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
Col8a1Q00780 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col8a1Q00780 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Col8a1Q00780 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC17.63■□□□□ 0.41
Col8a1Q00780 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col8a1Q00780 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col8a1Q00780 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col8a1Q00780 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col8a1Q00780 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col8a1Q00780 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col8a1Q00780 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.62■□□□□ 0.41
Col8a1Q00780 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Col8a1Q00780 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.62■□□□□ 0.41
Col8a1Q00780 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col8a1Q00780 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col8a1Q00780 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col8a1Q00780 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col8a1Q00780 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col8a1Q00780 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC17.61■□□□□ 0.41
Col8a1Q00780 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col8a1Q00780 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.61■□□□□ 0.41
Col8a1Q00780 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col8a1Q00780 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col8a1Q00780 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col8a1Q00780 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.6■□□□□ 0.41
Col8a1Q00780 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.6■□□□□ 0.41
Col8a1Q00780 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Col8a1Q00780 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.6■□□□□ 0.41
Col8a1Q00780 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col8a1Q00780 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col8a1Q00780 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.6■□□□□ 0.41
Col8a1Q00780 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Col8a1Q00780 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col8a1Q00780 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col8a1Q00780 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col8a1Q00780 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col8a1Q00780 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col8a1Q00780 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Col8a1Q00780 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col8a1Q00780 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col8a1Q00780 Gm26833-201ENSMUST00000180899 440 ntBASIC17.58■□□□□ 0.4
Col8a1Q00780 Gm43060-201ENSMUST00000200621 289 ntBASIC17.58■□□□□ 0.4
Col8a1Q00780 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col8a1Q00780 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC17.58■□□□□ 0.4
Col8a1Q00780 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Col8a1Q00780 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Col8a1Q00780 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Col8a1Q00780 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col8a1Q00780 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col8a1Q00780 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col8a1Q00780 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col8a1Q00780 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col8a1Q00780 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col8a1Q00780 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col8a1Q00780 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col8a1Q00780 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col8a1Q00780 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col8a1Q00780 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
Col8a1Q00780 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.55■□□□□ 0.4
Col8a1Q00780 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.55■□□□□ 0.4
Col8a1Q00780 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col8a1Q00780 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Col8a1Q00780 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col8a1Q00780 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col8a1Q00780 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.54■□□□□ 0.4
Col8a1Q00780 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col8a1Q00780 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC17.54■□□□□ 0.4
Col8a1Q00780 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
Col8a1Q00780 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col8a1Q00780 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col8a1Q00780 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Col8a1Q00780 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col8a1Q00780 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms