Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
Nkx3-1P97436 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Nkx3-1P97436 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.89■□□□□ 0.45
Nkx3-1P97436 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Nkx3-1P97436 Gm6139-201ENSMUST00000079261 882 ntBASIC17.89■□□□□ 0.45
Nkx3-1P97436 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC17.89■□□□□ 0.45
Nkx3-1P97436 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.89■□□□□ 0.45
Nkx3-1P97436 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Nkx3-1P97436 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.89■□□□□ 0.45
Nkx3-1P97436 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.89■□□□□ 0.45
Nkx3-1P97436 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.88■□□□□ 0.45
Nkx3-1P97436 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
Nkx3-1P97436 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Nkx3-1P97436 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.87■□□□□ 0.45
Nkx3-1P97436 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Nkx3-1P97436 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Nkx3-1P97436 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Nkx3-1P97436 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Nkx3-1P97436 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Nkx3-1P97436 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Mir7075-201ENSMUST00000184187 82 ntBASIC17.86■□□□□ 0.45
Nkx3-1P97436 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Nkx3-1P97436 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Nkx3-1P97436 H3f3aos-201ENSMUST00000097448 2905 ntBASIC17.85■□□□□ 0.45
Nkx3-1P97436 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
Nkx3-1P97436 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.85■□□□□ 0.45
Nkx3-1P97436 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Nkx3-1P97436 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Nkx3-1P97436 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Gm7143-201ENSMUST00000222811 859 ntBASIC17.84■□□□□ 0.45
Nkx3-1P97436 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nkx3-1P97436 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nkx3-1P97436 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Nkx3-1P97436 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nkx3-1P97436 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Nkx3-1P97436 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Nkx3-1P97436 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.83■□□□□ 0.44
Nkx3-1P97436 Flvcr1-202ENSMUST00000191946 1216 ntBASIC17.83■□□□□ 0.44
Nkx3-1P97436 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.83■□□□□ 0.44
Nkx3-1P97436 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Nkx3-1P97436 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Nkx3-1P97436 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Nkx3-1P97436 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Nkx3-1P97436 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx3-1P97436 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.8■□□□□ 0.44
Nkx3-1P97436 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Gm8495-201ENSMUST00000188740 694 ntBASIC17.8■□□□□ 0.44
Nkx3-1P97436 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Nkx3-1P97436 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 15 ms