Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.94■■□□□ 1.1
Shmt1P50431 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Shmt1P50431 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Shmt1P50431 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Shmt1P50431 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Shmt1P50431 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.93■■□□□ 1.1
Shmt1P50431 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.93■■□□□ 1.1
Shmt1P50431 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Shmt1P50431 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Shmt1P50431 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.93■■□□□ 1.1
Shmt1P50431 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.92■■□□□ 1.1
Shmt1P50431 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Shmt1P50431 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Shmt1P50431 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.92■■□□□ 1.1
Shmt1P50431 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Shmt1P50431 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Shmt1P50431 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Shmt1P50431 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Shmt1P50431 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Shmt1P50431 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Shmt1P50431 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Shmt1P50431 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Shmt1P50431 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Shmt1P50431 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Shmt1P50431 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Shmt1P50431 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.91■■□□□ 1.1
Shmt1P50431 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Shmt1P50431 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Shmt1P50431 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Shmt1P50431 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.9■■□□□ 1.1
Shmt1P50431 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.9■■□□□ 1.1
Shmt1P50431 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Shmt1P50431 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.9■■□□□ 1.1
Shmt1P50431 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Shmt1P50431 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Shmt1P50431 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Shmt1P50431 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.89■■□□□ 1.09
Shmt1P50431 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Shmt1P50431 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.89■■□□□ 1.09
Shmt1P50431 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Shmt1P50431 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Shmt1P50431 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.88■■□□□ 1.09
Shmt1P50431 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.88■■□□□ 1.09
Shmt1P50431 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.88■■□□□ 1.09
Shmt1P50431 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Shmt1P50431 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Shmt1P50431 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Shmt1P50431 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Shmt1P50431 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Shmt1P50431 Gm21956-201ENSMUST00000179946 522 ntBASIC21.87■■□□□ 1.09
Shmt1P50431 Gm9847-201ENSMUST00000052528 599 ntBASIC21.87■■□□□ 1.09
Shmt1P50431 Gm9870-201ENSMUST00000063874 645 ntBASIC21.87■■□□□ 1.09
Shmt1P50431 Gm13241-201ENSMUST00000094493 780 ntBASIC21.87■■□□□ 1.09
Shmt1P50431 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Shmt1P50431 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Shmt1P50431 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Shmt1P50431 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Shmt1P50431 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Shmt1P50431 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Shmt1P50431 Gm12922-201ENSMUST00000120626 809 ntBASIC21.86■■□□□ 1.09
Shmt1P50431 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC21.86■■□□□ 1.09
Shmt1P50431 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Shmt1P50431 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Shmt1P50431 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
Shmt1P50431 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Shmt1P50431 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Shmt1P50431 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.85■■□□□ 1.09
Shmt1P50431 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.85■■□□□ 1.09
Shmt1P50431 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Shmt1P50431 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Shmt1P50431 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Shmt1P50431 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Shmt1P50431 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.85■■□□□ 1.09
Shmt1P50431 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
Shmt1P50431 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Shmt1P50431 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Shmt1P50431 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Shmt1P50431 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.83■■□□□ 1.09
Shmt1P50431 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Shmt1P50431 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Shmt1P50431 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC21.82■■□□□ 1.08
Shmt1P50431 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms