Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Msx1P13297 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msx1P13297 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msx1P13297 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Msx1P13297 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Msx1P13297 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msx1P13297 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.55■□□□□ 0.72
Msx1P13297 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msx1P13297 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msx1P13297 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Msx1P13297 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Msx1P13297 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.54■□□□□ 0.72
Msx1P13297 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.54■□□□□ 0.72
Msx1P13297 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msx1P13297 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
Msx1P13297 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msx1P13297 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.53■□□□□ 0.72
Msx1P13297 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
Msx1P13297 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.53■□□□□ 0.72
Msx1P13297 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.53■□□□□ 0.72
Msx1P13297 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.53■□□□□ 0.72
Msx1P13297 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.53■□□□□ 0.72
Msx1P13297 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msx1P13297 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msx1P13297 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msx1P13297 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msx1P13297 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.53■□□□□ 0.72
Msx1P13297 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msx1P13297 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msx1P13297 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msx1P13297 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msx1P13297 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.52■□□□□ 0.72
Msx1P13297 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Msx1P13297 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.52■□□□□ 0.72
Msx1P13297 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.52■□□□□ 0.72
Msx1P13297 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.52■□□□□ 0.72
Msx1P13297 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msx1P13297 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.52■□□□□ 0.71
Msx1P13297 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
Msx1P13297 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.51■□□□□ 0.71
Msx1P13297 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Msx1P13297 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msx1P13297 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Msx1P13297 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.5■□□□□ 0.71
Msx1P13297 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Msx1P13297 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Msx1P13297 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Msx1P13297 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Msx1P13297 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.5■□□□□ 0.71
Msx1P13297 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx1P13297 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.49■□□□□ 0.71
Msx1P13297 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.49■□□□□ 0.71
Msx1P13297 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx1P13297 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Msx1P13297 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx1P13297 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx1P13297 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC19.48■□□□□ 0.71
Msx1P13297 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Msx1P13297 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msx1P13297 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx1P13297 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.48■□□□□ 0.71
Msx1P13297 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx1P13297 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
Msx1P13297 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx1P13297 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Msx1P13297 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.47■□□□□ 0.71
Msx1P13297 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Msx1P13297 Gm8495-201ENSMUST00000188740 694 ntBASIC19.47■□□□□ 0.71
Msx1P13297 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.47■□□□□ 0.71
Msx1P13297 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.47■□□□□ 0.71
Msx1P13297 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx1P13297 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx1P13297 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msx1P13297 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msx1P13297 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Msx1P13297 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.46■□□□□ 0.71
Msx1P13297 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx1P13297 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.46■□□□□ 0.71
Msx1P13297 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Msx1P13297 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Msx1P13297 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msx1P13297 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx1P13297 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Msx1P13297 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx1P13297 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms