Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lire1P11260 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lire1P11260 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.25■□□□□ 0.67
Lire1P11260 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Lire1P11260 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Lire1P11260 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Etf1-202ENSMUST00000180351 108 ntBASIC19.24■□□□□ 0.67
Lire1P11260 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lire1P11260 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Lire1P11260 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lire1P11260 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lire1P11260 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lire1P11260 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lire1P11260 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lire1P11260 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lire1P11260 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.22■□□□□ 0.67
Lire1P11260 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Lire1P11260 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Lire1P11260 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.22■□□□□ 0.67
Lire1P11260 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.22■□□□□ 0.67
Lire1P11260 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.22■□□□□ 0.67
Lire1P11260 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Lire1P11260 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lire1P11260 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.21■□□□□ 0.67
Lire1P11260 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Lire1P11260 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lire1P11260 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.21■□□□□ 0.67
Lire1P11260 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lire1P11260 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.21■□□□□ 0.67
Lire1P11260 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lire1P11260 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.21■□□□□ 0.67
Lire1P11260 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lire1P11260 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lire1P11260 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Lire1P11260 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Lire1P11260 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lire1P11260 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Lire1P11260 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.2■□□□□ 0.66
Lire1P11260 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.2■□□□□ 0.66
Lire1P11260 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Lire1P11260 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lire1P11260 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.2■□□□□ 0.66
Lire1P11260 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Lire1P11260 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lire1P11260 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.18■□□□□ 0.66
Lire1P11260 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Lire1P11260 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lire1P11260 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.17■□□□□ 0.66
Lire1P11260 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Lire1P11260 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lire1P11260 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lire1P11260 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lire1P11260 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Lire1P11260 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lire1P11260 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Lire1P11260 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.16■□□□□ 0.66
Lire1P11260 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lire1P11260 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.16■□□□□ 0.66
Lire1P11260 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lire1P11260 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Lire1P11260 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lire1P11260 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lire1P11260 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.16■□□□□ 0.66
Lire1P11260 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms