Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Col1a1P11087 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Col1a1P11087 Gm43060-201ENSMUST00000200621 289 ntBASIC24.68■■□□□ 1.54
Col1a1P11087 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Col1a1P11087 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Col1a1P11087 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC24.67■■□□□ 1.54
Col1a1P11087 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC24.67■■□□□ 1.54
Col1a1P11087 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
Col1a1P11087 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC24.67■■□□□ 1.54
Col1a1P11087 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Col1a1P11087 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Col1a1P11087 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col1a1P11087 Gm42569-201ENSMUST00000200539 472 ntBASIC24.66■■□□□ 1.54
Col1a1P11087 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col1a1P11087 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col1a1P11087 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC24.66■■□□□ 1.54
Col1a1P11087 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col1a1P11087 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col1a1P11087 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
Col1a1P11087 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Col1a1P11087 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC24.65■■□□□ 1.54
Col1a1P11087 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Col1a1P11087 AC099934.2-201ENSMUST00000196389 70 ntBASIC24.64■■□□□ 1.54
Col1a1P11087 AC156953.1-201ENSMUST00000196953 70 ntBASIC24.64■■□□□ 1.54
Col1a1P11087 AC157822.2-201ENSMUST00000200291 70 ntBASIC24.64■■□□□ 1.54
Col1a1P11087 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Col1a1P11087 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Col1a1P11087 AC166356.1-201ENSMUST00000228236 1426 ntBASIC24.64■■□□□ 1.54
Col1a1P11087 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
Col1a1P11087 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Col1a1P11087 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Col1a1P11087 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Col1a1P11087 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Col1a1P11087 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Col1a1P11087 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Col1a1P11087 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Col1a1P11087 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Col1a1P11087 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC24.62■■□□□ 1.53
Col1a1P11087 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC24.62■■□□□ 1.53
Col1a1P11087 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
Col1a1P11087 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
Col1a1P11087 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Col1a1P11087 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Col1a1P11087 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Col1a1P11087 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Col1a1P11087 Gm10129-202ENSMUST00000193100 1316 ntBASIC24.6■■□□□ 1.53
Col1a1P11087 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Col1a1P11087 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col1a1P11087 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col1a1P11087 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC24.59■■□□□ 1.53
Col1a1P11087 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC24.59■■□□□ 1.53
Col1a1P11087 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
Col1a1P11087 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC24.59■■□□□ 1.53
Col1a1P11087 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
Col1a1P11087 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Col1a1P11087 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col1a1P11087 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
Col1a1P11087 Gm37179-201ENSMUST00000194862 823 ntBASIC24.58■■□□□ 1.53
Col1a1P11087 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col1a1P11087 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col1a1P11087 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Col1a1P11087 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col1a1P11087 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Col1a1P11087 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC24.58■■□□□ 1.52
Col1a1P11087 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC24.58■■□□□ 1.52
Col1a1P11087 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Col1a1P11087 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
Col1a1P11087 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
Col1a1P11087 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col1a1P11087 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col1a1P11087 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Col1a1P11087 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC24.56■■□□□ 1.52
Col1a1P11087 Gm40848-201ENSMUST00000221998 324 ntBASIC24.56■■□□□ 1.52
Col1a1P11087 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Col1a1P11087 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Col1a1P11087 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Col1a1P11087 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
Col1a1P11087 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Col1a1P11087 Gm42642-201ENSMUST00000200683 355 ntBASIC24.54■■□□□ 1.52
Col1a1P11087 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Col1a1P11087 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
Col1a1P11087 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Col1a1P11087 Il17rd-202ENSMUST00000223942 2186 ntBASIC24.54■■□□□ 1.52
Col1a1P11087 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col1a1P11087 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC24.53■■□□□ 1.52
Col1a1P11087 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Col1a1P11087 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col1a1P11087 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col1a1P11087 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col1a1P11087 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
Col1a1P11087 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Col1a1P11087 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Col1a1P11087 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC24.52■■□□□ 1.52
Col1a1P11087 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms