Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
Clip3B9EHT4 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Clip3B9EHT4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Gm22238-201ENSMUST00000175222 88 ntBASIC19.84■□□□□ 0.77
Clip3B9EHT4 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Clip3B9EHT4 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.83■□□□□ 0.76
Clip3B9EHT4 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Clip3B9EHT4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clip3B9EHT4 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clip3B9EHT4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clip3B9EHT4 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.82■□□□□ 0.76
Clip3B9EHT4 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Clip3B9EHT4 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.82■□□□□ 0.76
Clip3B9EHT4 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clip3B9EHT4 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.8■□□□□ 0.76
Clip3B9EHT4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Clip3B9EHT4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clip3B9EHT4 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clip3B9EHT4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Clip3B9EHT4 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clip3B9EHT4 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clip3B9EHT4 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clip3B9EHT4 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clip3B9EHT4 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Clip3B9EHT4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clip3B9EHT4 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.75■□□□□ 0.75
Clip3B9EHT4 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms