Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trim3Q9R1R2 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.59
Trim3Q9R1R2 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm11930-201ENSMUST00000117788 190 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm9083-201ENSMUST00000120423 819 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm15547-201ENSMUST00000122152 333 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm13570-201ENSMUST00000140763 309 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm18304-201ENSMUST00000189162 546 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm38000-201ENSMUST00000192390 1215 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm38241-201ENSMUST00000192641 898 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm4857-201ENSMUST00000192718 785 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm6082-201ENSMUST00000215204 454 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm10076-201ENSMUST00000073238 384 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm24136-201ENSMUST00000083374 165 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 AC160405.1-201ENSMUST00000218207 1545 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trim3Q9R1R2 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm27390-201ENSMUST00000184516 176 ntBASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms