Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm23931-201ENSMUST00000103842 109 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Snora78-201ENSMUST00000158630 128 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm5781-201ENSMUST00000219792 443 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 AC140451.2-201ENSMUST00000228030 664 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 AC138329.2-201ENSMUST00000225579 1842 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.85□□□□□ -0.51
Lima1Q9ERG0 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm24548-201ENSMUST00000158650 108 ntBASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Gm45930-201ENSMUST00000221330 292 ntBASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 AC108416.1-202ENSMUST00000228927 1201 ntBASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms