Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Gm19680-201ENSMUST00000095050 1513 ntBASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Slco5a1-202ENSMUST00000115403 8509 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Ccdc9Q8VC31 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm38194-201ENSMUST00000194529 2211 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm14760-201ENSMUST00000121831 999 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gm7964-201ENSMUST00000051522 1378 ntBASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Fmod-201ENSMUST00000048183 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc9Q8VC31 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Lmo3-207ENSMUST00000163065 2425 ntTSL 3 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Rbm3-201ENSMUST00000040010 2792 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Bicd2-202ENSMUST00000110084 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Spata33-207ENSMUST00000212760 4074 ntBASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC14.43□□□□□ -0.1
Ccdc9Q8VC31 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc9Q8VC31 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC14.42□□□□□ -0.1
Ccdc9Q8VC31 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc9Q8VC31 Gm37447-201ENSMUST00000195625 2928 ntBASIC14.42□□□□□ -0.1
Ccdc9Q8VC31 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc9Q8VC31 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc9Q8VC31 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms