Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Gm43172-201ENSMUST00000202139 2137 ntBASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps39Q8R5L3 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.04□□□□□ -0.48
Vps39Q8R5L3 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm11531-201ENSMUST00000117614 555 ntBASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm13786-201ENSMUST00000122371 333 ntBASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm24845-201ENSMUST00000158034 109 ntBASIC12.03□□□□□ -0.48
Vps39Q8R5L3 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm29396-201ENSMUST00000185659 716 ntBASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm5186-201ENSMUST00000218781 920 ntBASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps39Q8R5L3 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Gm4864-201ENSMUST00000219894 1461 ntBASIC12.02□□□□□ -0.48
Vps39Q8R5L3 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps39Q8R5L3 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Gm38241-201ENSMUST00000192641 898 ntBASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Gm10608-202ENSMUST00000213924 676 ntBASIC12.02□□□□□ -0.49
Vps39Q8R5L3 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps39Q8R5L3 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Vps39Q8R5L3 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Vps39Q8R5L3 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Vps39Q8R5L3 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms