Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Abhd11os-203ENSMUST00000222613 363 ntBASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Nup88Q8CEC0 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm13996-201ENSMUST00000118456 430 ntBASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm14277-201ENSMUST00000121195 360 ntBASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Gm19692-201ENSMUST00000203856 2084 ntBASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC14.18□□□□□ -0.14
Nup88Q8CEC0 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Gm9333-201ENSMUST00000205452 1323 ntBASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Gm12217-201ENSMUST00000118858 696 ntBASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Gm25700-201ENSMUST00000177693 110 ntBASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Nup88Q8CEC0 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms