Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC14.16□□□□□ -0.14
Limch1Q3UH68 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Limch1Q3UH68 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Rprl1-201ENSMUST00000158050 327 ntBASIC14.15□□□□□ -0.14
Limch1Q3UH68 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Limch1Q3UH68 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 AC154671.1-201ENSMUST00000228617 1578 ntBASIC14.14□□□□□ -0.15
Limch1Q3UH68 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.14□□□□□ -0.15
Limch1Q3UH68 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Gm43947-201ENSMUST00000203019 959 ntBASIC14.14□□□□□ -0.15
Limch1Q3UH68 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Gm10312-201ENSMUST00000078515 489 ntBASIC14.14□□□□□ -0.15
Limch1Q3UH68 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Gm45495-201ENSMUST00000200940 1700 ntBASIC14.14□□□□□ -0.15
Limch1Q3UH68 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Limch1Q3UH68 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm12036-201ENSMUST00000120008 530 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC14.13□□□□□ -0.15
Limch1Q3UH68 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Limch1Q3UH68 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC14.13□□□□□ -0.15
Limch1Q3UH68 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms