Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm7278-201ENSMUST00000119836 1401 ntBASIC13.3□□□□□ -0.28
Col6a1Q04857 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Matn2-203ENSMUST00000226766 3252 ntBASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm8737-201ENSMUST00000122208 642 ntBASIC13.3□□□□□ -0.28
Col6a1Q04857 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm43692-201ENSMUST00000198236 1062 ntBASIC13.3□□□□□ -0.28
Col6a1Q04857 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.3□□□□□ -0.28
Col6a1Q04857 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm25201-201ENSMUST00000083093 170 ntBASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Col6a1Q04857 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col6a1Q04857 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col6a1Q04857 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.29□□□□□ -0.28
Col6a1Q04857 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.29□□□□□ -0.28
Col6a1Q04857 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Pck2-205ENSMUST00000226352 2784 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm15352-201ENSMUST00000118696 270 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm13937-201ENSMUST00000121000 988 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC13.29□□□□□ -0.28
Col6a1Q04857 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm23045-201ENSMUST00000175041 96 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm5621-201ENSMUST00000187303 640 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 AC073947.1-201ENSMUST00000216991 649 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Gm9139-201ENSMUST00000218817 700 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 AC140375.1-201ENSMUST00000225421 694 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col6a1Q04857 Mir483-201ENSMUST00000093631 73 ntBASIC13.29□□□□□ -0.28
Col6a1Q04857 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC13.29□□□□□ -0.28
Col6a1Q04857 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
Col6a1Q04857 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col6a1Q04857 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Col6a1Q04857 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms