Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 AC102368.1-201ENSMUST00000227161 892 ntBASIC11.41□□□□□ -0.58
Cdx2P43241 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx2P43241 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx2P43241 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx2P43241 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Cdx2P43241 Gm37859-201ENSMUST00000195529 2173 ntBASIC11.41□□□□□ -0.58
Cdx2P43241 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.41□□□□□ -0.58
Cdx2P43241 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx2P43241 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx2P43241 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx2P43241 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx2P43241 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx2P43241 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cdx2P43241 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.4□□□□□ -0.58
Cdx2P43241 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC11.4□□□□□ -0.58
Cdx2P43241 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cdx2P43241 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Gm9630-201ENSMUST00000178304 885 ntBASIC11.4□□□□□ -0.58
Cdx2P43241 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC11.4□□□□□ -0.58
Cdx2P43241 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC11.4□□□□□ -0.58
Cdx2P43241 Gm45120-201ENSMUST00000208880 408 ntBASIC11.4□□□□□ -0.58
Cdx2P43241 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.4□□□□□ -0.58
Cdx2P43241 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC11.4□□□□□ -0.58
Cdx2P43241 AC124433.1-201ENSMUST00000224483 1063 ntBASIC11.4□□□□□ -0.58
Cdx2P43241 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cdx2P43241 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cdx2P43241 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.4□□□□□ -0.58
Cdx2P43241 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC11.4□□□□□ -0.58
Cdx2P43241 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cdx2P43241 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cdx2P43241 Gm36970-201ENSMUST00000193688 1859 ntBASIC11.4□□□□□ -0.59
Cdx2P43241 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Cdx2P43241 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cdx2P43241 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC11.4□□□□□ -0.59
Cdx2P43241 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.4□□□□□ -0.59
Cdx2P43241 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cdx2P43241 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Cdx2P43241 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.59
Cdx2P43241 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Cdx2P43241 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
Cdx2P43241 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Cdx2P43241 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Gm7150-201ENSMUST00000122032 981 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC11.39□□□□□ -0.59
Cdx2P43241 Gm22877-201ENSMUST00000175451 105 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11.39□□□□□ -0.59
Cdx2P43241 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Gm5298-201ENSMUST00000201122 892 ntBASIC11.39□□□□□ -0.59
Cdx2P43241 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Cdx2P43241 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
Cdx2P43241 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
Cdx2P43241 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cdx2P43241 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms