Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Gm43221-201ENSMUST00000197612 2071 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Lire1P11260 Gm8320-201ENSMUST00000177584 1762 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm8303-201ENSMUST00000178371 1762 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Gm8331-201ENSMUST00000178433 1762 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Gm38901-201ENSMUST00000202448 3008 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.51□□□□□ -0.57
Lire1P11260 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Lire1P11260 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Sox13-203ENSMUST00000144386 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Lire1P11260 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Gm44292-201ENSMUST00000205194 2364 ntBASIC11.5□□□□□ -0.57
Lire1P11260 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Lire1P11260 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC11.5□□□□□ -0.57
Lire1P11260 Gm11964-201ENSMUST00000120982 444 ntBASIC11.5□□□□□ -0.57
Lire1P11260 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.5□□□□□ -0.57
Lire1P11260 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.5□□□□□ -0.57
Lire1P11260 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC11.5□□□□□ -0.57
Lire1P11260 Gm19931-201ENSMUST00000198920 368 ntBASIC11.5□□□□□ -0.57
Lire1P11260 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC11.5□□□□□ -0.57
Lire1P11260 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC11.5□□□□□ -0.57
Lire1P11260 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Lire1P11260 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Lire1P11260 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.5□□□□□ -0.57
Lire1P11260 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Lire1P11260 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC11.5□□□□□ -0.57
Lire1P11260 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Lire1P11260 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Lire1P11260 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Gm45165-201ENSMUST00000207763 1631 ntBASIC11.49□□□□□ -0.57
Lire1P11260 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 AC137842.1-201ENSMUST00000227896 2064 ntBASIC11.49□□□□□ -0.57
Lire1P11260 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.49□□□□□ -0.57
Lire1P11260 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Gm18753-201ENSMUST00000201000 566 ntBASIC11.49□□□□□ -0.57
Lire1P11260 Gm7619-201ENSMUST00000210649 1282 ntBASIC11.49□□□□□ -0.57
Lire1P11260 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.49□□□□□ -0.57
Lire1P11260 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.49□□□□□ -0.57
Lire1P11260 Gm19163-201ENSMUST00000223313 780 ntBASIC11.49□□□□□ -0.57
Lire1P11260 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms