Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm25890-201ENSMUST00000177643 165 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm22614-201ENSMUST00000178300 165 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm38241-201ENSMUST00000192641 898 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm38317-201ENSMUST00000195564 343 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm13097-201ENSMUST00000210722 397 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm9257-201ENSMUST00000221254 232 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm22042-201ENSMUST00000082989 165 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm26232-201ENSMUST00000083360 166 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gm26110-201ENSMUST00000083971 165 ntBASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Chmp6P0C0A3 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Gm9678-201ENSMUST00000198979 1149 ntBASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chmp6P0C0A3 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Gm44086-201ENSMUST00000203251 2349 ntBASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.08□□□□□ -0.31
Chmp6P0C0A3 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Chmp6P0C0A3 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Gm15808-201ENSMUST00000119046 604 ntBASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Gm25700-201ENSMUST00000177693 110 ntBASIC13.08□□□□□ -0.32
Chmp6P0C0A3 AA914427-201ENSMUST00000193194 1166 ntBASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Crry-ps-201ENSMUST00000079090 1309 ntBASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms