Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Chd3B1AR17 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Chd3B1AR17 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm13916-201ENSMUST00000117368 628 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm23045-201ENSMUST00000175041 96 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm6114-201ENSMUST00000182472 968 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm5732-201ENSMUST00000182596 1007 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm5733-201ENSMUST00000190232 939 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm17831-201ENSMUST00000205579 900 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 AC151275.1-201ENSMUST00000224870 585 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Chd3B1AR17 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm43463-201ENSMUST00000195967 1803 ntBASIC11.77□□□□□ -0.53
Chd3B1AR17 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Chd3B1AR17 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Chd3B1AR17 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Chd3B1AR17 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Cog3-203ENSMUST00000227473 4197 ntBASIC11.76□□□□□ -0.53
Chd3B1AR17 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 n-R5s64-201ENSMUST00000102019 119 ntBASIC11.76□□□□□ -0.53
Chd3B1AR17 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Gm12419-201ENSMUST00000116649 636 ntBASIC11.76□□□□□ -0.53
Chd3B1AR17 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Chd3B1AR17 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.76□□□□□ -0.53
Chd3B1AR17 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Gm37348-201ENSMUST00000193104 1789 ntBASIC11.76□□□□□ -0.53
Chd3B1AR17 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Chd3B1AR17 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Chd3B1AR17 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm9192-201ENSMUST00000183221 985 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm43184-201ENSMUST00000197247 542 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm6867-201ENSMUST00000219165 425 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms