Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Prpf40aQ9R1C7 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Prpf40aQ9R1C7 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Prpf40aQ9R1C7 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Prpf40aQ9R1C7 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm40377-201ENSMUST00000204604 2015 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 AC154517.2-201ENSMUST00000220829 2458 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm20482-202ENSMUST00000174729 825 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm45359-201ENSMUST00000210635 427 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm7172-201ENSMUST00000218047 1152 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm8712-201ENSMUST00000221090 701 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 AC122371.3-201ENSMUST00000223402 1061 ntBASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Prpf40aQ9R1C7 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm28923-201ENSMUST00000187755 322 ntBASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm15396-201ENSMUST00000209101 1089 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm17872-201ENSMUST00000222550 532 ntBASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm40383-201ENSMUST00000222601 610 ntTSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm43061-201ENSMUST00000198850 2241 ntBASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Prpf40aQ9R1C7 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Prpf40aQ9R1C7 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Prpf40aQ9R1C7 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Prpf40aQ9R1C7 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Prpf40aQ9R1C7 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.27□□□□□ -0.28
Prpf40aQ9R1C7 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms