Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm6018-201ENSMUST00000216090 1306 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Mcm3ap-201ENSMUST00000170795 6427 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Fyco1-202ENSMUST00000167595 7692 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Actbl2-201ENSMUST00000054716 2737 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Retreg1-206ENSMUST00000228306 1430 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Vwf-203ENSMUST00000112254 8834 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Nrp1-201ENSMUST00000026917 3597 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm24543-201ENSMUST00000103867 82 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm13884-201ENSMUST00000118103 829 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm13015-201ENSMUST00000118674 204 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm12350-201ENSMUST00000121208 462 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm9229-201ENSMUST00000222777 126 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm807-202ENSMUST00000224929 408 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Nav2-204ENSMUST00000183659 7765 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 6430573F11Rik-203ENSMUST00000147525 5820 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 AC164092.1-201ENSMUST00000215635 2232 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Epb41-202ENSMUST00000054917 4948 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 AC167022.1-201ENSMUST00000218647 1458 ntBASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Ptpre-208ENSMUST00000211788 2331 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Smco4Q9JIS3 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Wnk1-224ENSMUST00000203030 8163 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Ccar2-201ENSMUST00000035612 3725 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Gm9035-201ENSMUST00000218318 1697 ntBASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Usp17le-202ENSMUST00000211384 1885 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Sall2-201ENSMUST00000058326 5147 ntAPPRIS P2 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Nlgn1-205ENSMUST00000193603 11807 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Gm15653-201ENSMUST00000119247 907 ntBASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Mir8117-201ENSMUST00000184773 107 ntBASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Gm38297-201ENSMUST00000195122 1057 ntBASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Gm18905-201ENSMUST00000205454 928 ntBASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC9.58□□□□□ -0.88
Smco4Q9JIS3 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC9.58□□□□□ -0.88
Retrieved 100 of 76,532 protein–RNA pairs in 258.3 ms