Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Smc1aQ9CU62 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm14109-201ENSMUST00000118814 309 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm13875-201ENSMUST00000120162 282 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 B9d1os-201ENSMUST00000137010 674 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Mir5120-201ENSMUST00000175020 78 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm27390-201ENSMUST00000184516 176 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Smc1aQ9CU62 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Gm26361-201ENSMUST00000158868 186 ntBASIC13.5□□□□□ -0.25
Smc1aQ9CU62 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC13.5□□□□□ -0.25
Smc1aQ9CU62 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Smc1aQ9CU62 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Smc1aQ9CU62 Gm7857-201ENSMUST00000117957 358 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms