Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ddx55Q6ZPL9 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm6655-201ENSMUST00000201932 1309 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm12030-201ENSMUST00000121917 223 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm28937-201ENSMUST00000185413 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm29400-201ENSMUST00000187208 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm28662-201ENSMUST00000188446 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm28251-201ENSMUST00000188835 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm37318-201ENSMUST00000194325 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm38017-201ENSMUST00000194768 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm37287-201ENSMUST00000195449 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm37793-201ENSMUST00000195548 695 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm5805-201ENSMUST00000072779 456 ntBASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
Ddx55Q6ZPL9 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Gm13022-201ENSMUST00000121181 285 ntBASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Gm20392-201ENSMUST00000173047 701 ntBASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Ddx55Q6ZPL9 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Ddx55Q6ZPL9 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms