Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC11.71□□□□□ -0.53
Col28a1Q2UY11 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Mir877-201ENSMUST00000104738 85 ntBASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm2231-201ENSMUST00000125661 612 ntBASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm7029-201ENSMUST00000173226 450 ntBASIC11.71□□□□□ -0.53
Col28a1Q2UY11 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm10146-201ENSMUST00000072739 309 ntBASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col28a1Q2UY11 Gm43823-201ENSMUST00000197391 1808 ntBASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col28a1Q2UY11 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm12241-201ENSMUST00000118330 726 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Rn7s1-201ENSMUST00000174924 300 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Rn7s2-201ENSMUST00000175032 300 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm26461-201ENSMUST00000175064 290 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm10608-202ENSMUST00000213924 676 ntBASIC11.7□□□□□ -0.54
Col28a1Q2UY11 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Col28a1Q2UY11 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms