Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
Col5a1O88207 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm20633-201ENSMUST00000176742 2831 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC10.72□□□□□ -0.69
Col5a1O88207 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Col5a1O88207 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm23272-201ENSMUST00000104053 129 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC10.72□□□□□ -0.69
Col5a1O88207 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm7719-201ENSMUST00000182374 975 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm7504-201ENSMUST00000201449 424 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm7940-201ENSMUST00000218195 769 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 AC165154.1-201ENSMUST00000226661 340 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 AC166574.4-201ENSMUST00000227165 1937 ntBASIC10.72□□□□□ -0.69
Col5a1O88207 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
Col5a1O88207 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Col5a1O88207 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col5a1O88207 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col5a1O88207 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col5a1O88207 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Col5a1O88207 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col5a1O88207 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
Col5a1O88207 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.71□□□□□ -0.69
Col5a1O88207 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC10.71□□□□□ -0.69
Col5a1O88207 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Mir744-201ENSMUST00000103261 100 ntBASIC10.71□□□□□ -0.69
Col5a1O88207 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Col5a1O88207 Gm14942-201ENSMUST00000119642 336 ntBASIC10.71□□□□□ -0.69
Col5a1O88207 Gm14441-201ENSMUST00000121960 540 ntBASIC10.71□□□□□ -0.69
Col5a1O88207 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Col5a1O88207 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC10.71□□□□□ -0.69
Col5a1O88207 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Gm8574-201ENSMUST00000203207 924 ntBASIC10.71□□□□□ -0.69
Col5a1O88207 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
Col5a1O88207 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC10.71□□□□□ -0.69
Col5a1O88207 Gm6390-201ENSMUST00000215034 589 ntBASIC10.71□□□□□ -0.69
Col5a1O88207 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Col5a1O88207 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col5a1O88207 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col5a1O88207 Gm17213-201ENSMUST00000165161 1360 ntBASIC10.71□□□□□ -0.7
Col5a1O88207 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col5a1O88207 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col5a1O88207 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Col5a1O88207 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Col5a1O88207 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC10.71□□□□□ -0.7
Col5a1O88207 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Col5a1O88207 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms