Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Gm11222-201ENSMUST00000119005 738 ntBASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Gm12997-201ENSMUST00000120207 640 ntBASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Gm15703-201ENSMUST00000120250 880 ntBASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 AC165260.3-202ENSMUST00000224550 1031 ntBASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sh3rf1Q69ZI1 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm24231-201ENSMUST00000104315 133 ntBASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm16296-201ENSMUST00000159905 325 ntBASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Olfr793-ps1-201ENSMUST00000205161 895 ntBASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm30285-201ENSMUST00000214614 422 ntBASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sh3rf1Q69ZI1 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Gm12715-201ENSMUST00000121430 1128 ntBASIC12.24□□□□□ -0.45
Sh3rf1Q69ZI1 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 98 ms