Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Gm9678-201ENSMUST00000198979 1149 ntBASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Upf3bQ3ULL6 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm14130-201ENSMUST00000118417 987 ntBASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm12164-201ENSMUST00000121695 551 ntBASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Upf3bQ3ULL6 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.35
Upf3bQ3ULL6 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Upf3bQ3ULL6 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Upf3bQ3ULL6 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gm15610-201ENSMUST00000120584 195 ntBASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gm4857-201ENSMUST00000192718 785 ntBASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.89□□□□□ -0.35
Upf3bQ3ULL6 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms