Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Gm45428-201ENSMUST00000209619 1789 ntBASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC11.74□□□□□ -0.53
Col28a1Q2UY11 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm26083-201ENSMUST00000157904 193 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm16570-201ENSMUST00000161951 436 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm37497-201ENSMUST00000195830 798 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Olfr284-202ENSMUST00000206647 966 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm45677-201ENSMUST00000209975 1341 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col28a1Q2UY11 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm25261-201ENSMUST00000157416 134 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm25927-201ENSMUST00000175058 117 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm26927-201ENSMUST00000182385 965 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm29199-201ENSMUST00000187766 775 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm37922-201ENSMUST00000195596 455 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Gm45865-201ENSMUST00000211815 945 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.72□□□□□ -0.53
Col28a1Q2UY11 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms