Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rfx1P48377 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Rfx1P48377 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Rfx1P48377 Gm13736-201ENSMUST00000119272 253 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Rfx1P48377 Gm16177-201ENSMUST00000120728 718 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.38□□□□□ -0.11
Rfx1P48377 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC14.38□□□□□ -0.11
Rfx1P48377 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Rfx1P48377 Gm26927-201ENSMUST00000182385 965 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Gm27682-201ENSMUST00000183930 110 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.38□□□□□ -0.11
Rfx1P48377 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC14.38□□□□□ -0.11
Rfx1P48377 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Gm36987-201ENSMUST00000194704 2979 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC14.38□□□□□ -0.11
Rfx1P48377 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Gm8793-201ENSMUST00000183069 1303 ntBASIC14.38□□□□□ -0.11
Rfx1P48377 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC14.38□□□□□ -0.11
Rfx1P48377 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Rfx1P48377 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Rfx1P48377 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC14.37□□□□□ -0.11
Rfx1P48377 Gm14716-201ENSMUST00000120138 718 ntBASIC14.37□□□□□ -0.11
Rfx1P48377 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC14.37□□□□□ -0.11
Rfx1P48377 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
Rfx1P48377 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.37□□□□□ -0.11
Rfx1P48377 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC14.37□□□□□ -0.11
Rfx1P48377 Gm6222-202ENSMUST00000182143 629 ntBASIC14.37□□□□□ -0.11
Rfx1P48377 Gm19087-201ENSMUST00000191430 946 ntBASIC14.37□□□□□ -0.11
Rfx1P48377 Gm42937-201ENSMUST00000197360 752 ntBASIC14.37□□□□□ -0.11
Rfx1P48377 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Rfx1P48377 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
Rfx1P48377 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Rfx1P48377 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Rfx1P48377 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Rfx1P48377 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.36□□□□□ -0.11
Rfx1P48377 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.36□□□□□ -0.11
Rfx1P48377 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC14.36□□□□□ -0.11
Rfx1P48377 Gm1335-201ENSMUST00000121653 386 ntBASIC14.36□□□□□ -0.11
Rfx1P48377 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.36□□□□□ -0.11
Rfx1P48377 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC14.36□□□□□ -0.11
Rfx1P48377 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Gm29649-201ENSMUST00000185649 419 ntBASIC14.36□□□□□ -0.11
Rfx1P48377 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Rfx1P48377 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC14.36□□□□□ -0.11
Rfx1P48377 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Gm45496-201ENSMUST00000209918 2917 ntBASIC14.36□□□□□ -0.11
Rfx1P48377 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC14.36□□□□□ -0.11
Rfx1P48377 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rfx1P48377 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms