Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm26286-201ENSMUST00000104166 134 ntBASIC13.99□□□□□ -0.17
Traf1P39428 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Traf1P39428 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
Traf1P39428 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC13.99□□□□□ -0.17
Traf1P39428 Gm44124-201ENSMUST00000204159 472 ntBASIC13.99□□□□□ -0.17
Traf1P39428 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 AC159308.2-201ENSMUST00000213592 2325 ntBASIC13.99□□□□□ -0.17
Traf1P39428 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Traf1P39428 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Gm37472-201ENSMUST00000192342 4052 ntBASIC13.99□□□□□ -0.17
Traf1P39428 AC171277.1-201ENSMUST00000216902 1441 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Traf1P39428 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Traf1P39428 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm23596-201ENSMUST00000104304 132 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm12501-201ENSMUST00000119163 529 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Gm11941-201ENSMUST00000119904 610 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC13.98□□□□□ -0.17
Traf1P39428 Gm12196-201ENSMUST00000120954 262 ntBASIC13.98□□□□□ -0.17
Traf1P39428 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC13.98□□□□□ -0.17
Traf1P39428 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC13.98□□□□□ -0.17
Traf1P39428 Gm25881-201ENSMUST00000157783 103 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm42629-201ENSMUST00000199063 1102 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm3786-201ENSMUST00000202659 378 ntBASIC13.98□□□□□ -0.17
Traf1P39428 AC153954.1-201ENSMUST00000216959 255 ntBASIC13.98□□□□□ -0.17
Traf1P39428 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.98□□□□□ -0.17
Traf1P39428 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC13.98□□□□□ -0.17
Traf1P39428 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Traf1P39428 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Traf1P39428 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Traf1P39428 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Traf1P39428 Gm13035-201ENSMUST00000117496 342 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC13.97□□□□□ -0.17
Traf1P39428 Gm23085-201ENSMUST00000157849 293 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC13.97□□□□□ -0.17
Traf1P39428 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Gm8956-201ENSMUST00000203939 825 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm4607-201ENSMUST00000206649 577 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Gm8959-201ENSMUST00000213150 571 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC13.97□□□□□ -0.17
Traf1P39428 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Traf1P39428 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Traf1P39428 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Traf1P39428 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Traf1P39428 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.97□□□□□ -0.17
Traf1P39428 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Traf1P39428 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Traf1P39428 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 78.7 ms