Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC15.58■□□□□ 0.08
Col18a1P39061 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC15.58■□□□□ 0.08
Col18a1P39061 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm37651-201ENSMUST00000194679 1494 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Col18a1P39061 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Col18a1P39061 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Gm6758-201ENSMUST00000119643 1055 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 Gm15746-201ENSMUST00000120684 1027 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 Gm11736-201ENSMUST00000121468 505 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 AC107752.1-201ENSMUST00000219362 469 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 Prss1-201ENSMUST00000031910 805 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Col18a1P39061 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Col18a1P39061 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Gm37437-201ENSMUST00000194451 1937 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Gm22388-201ENSMUST00000158194 248 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC15.57■□□□□ 0.08
Col18a1P39061 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Col18a1P39061 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC15.57■□□□□ 0.08
Col18a1P39061 3930402G23Rik-202ENSMUST00000208615 581 ntTSL 3 BASIC15.57■□□□□ 0.08
Col18a1P39061 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Col18a1P39061 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col18a1P39061 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC15.56■□□□□ 0.08
Col18a1P39061 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Col18a1P39061 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Gm10614-201ENSMUST00000181414 2538 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Gm5740-201ENSMUST00000211003 1857 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Col18a1P39061 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Col18a1P39061 Mir1249-201ENSMUST00000116791 98 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Gm8601-201ENSMUST00000182096 909 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Rhox12-203ENSMUST00000183737 761 ntTSL 3 BASIC15.56■□□□□ 0.08
Col18a1P39061 Gm19927-201ENSMUST00000185792 781 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Gm37723-201ENSMUST00000194480 565 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Gm42689-201ENSMUST00000202403 404 ntBASIC15.56■□□□□ 0.08
Col18a1P39061 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Ngp-201ENSMUST00000035061 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col18a1P39061 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col18a1P39061 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Col18a1P39061 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC15.56■□□□□ 0.08
Col18a1P39061 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col18a1P39061 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Col18a1P39061 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col18a1P39061 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Col18a1P39061 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Col18a1P39061 Nptn-202ENSMUST00000114121 863 ntTSL 5 BASIC15.55■□□□□ 0.08
Col18a1P39061 Gm12684-201ENSMUST00000118675 999 ntBASIC15.55■□□□□ 0.08
Col18a1P39061 Gm5342-201ENSMUST00000181982 1003 ntBASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms