Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Pcdh1F7BJK1 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Pcdh1F7BJK1 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
Pcdh1F7BJK1 Gm8706-201ENSMUST00000197372 1491 ntBASIC10.87□□□□□ -0.67
Pcdh1F7BJK1 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Pcdh1F7BJK1 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.87□□□□□ -0.67
Pcdh1F7BJK1 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm27682-201ENSMUST00000183930 110 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm42937-201ENSMUST00000197360 752 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm18584-201ENSMUST00000203098 964 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Zscan30-202ENSMUST00000224144 1458 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Gm8131-201ENSMUST00000213783 1570 ntBASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Pcdh1F7BJK1 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Gm23912-201ENSMUST00000104687 87 ntBASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Gm5745-201ENSMUST00000183748 313 ntBASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Gm8602-201ENSMUST00000184045 607 ntBASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Dhrs4-202ENSMUST00000226168 828 ntBASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Pcdh1F7BJK1 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms