Protein–RNA interactions for Protein: E9PXC0

Srp54b, Signal recognition particle 54 kDa protein, mousemouse

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Srp54bE9PXC0 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Gm9630-201ENSMUST00000178304 885 ntBASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Gm8100-201ENSMUST00000182906 988 ntBASIC11.93□□□□□ -0.5
Srp54bE9PXC0 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Gm6905-201ENSMUST00000205729 511 ntBASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 CT009713.8-201ENSMUST00000225448 560 ntBASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Srp54bE9PXC0 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm12164-201ENSMUST00000121695 551 ntBASIC11.92□□□□□ -0.5
Srp54bE9PXC0 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm2965-201ENSMUST00000198365 343 ntBASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm8956-201ENSMUST00000203939 825 ntBASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm10288-201ENSMUST00000084614 537 ntBASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Cog3-203ENSMUST00000227473 4197 ntBASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Srp54bE9PXC0 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Cd63-ps-202ENSMUST00000154992 717 ntBASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Gm28686-201ENSMUST00000187404 609 ntBASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Gm45770-201ENSMUST00000212105 616 ntBASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Gm18556-201ENSMUST00000219748 1031 ntBASIC11.91□□□□□ -0.5
Srp54bE9PXC0 AC121960.1-201ENSMUST00000227982 564 ntBASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Srp54bE9PXC0 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms