Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm29787-201ENSMUST00000222129 849 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 AC154276.3-201ENSMUST00000227643 998 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Sf3b1Q99NB9 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Sf3b1Q99NB9 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.83□□□□□ -0.35
Sf3b1Q99NB9 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Sf3b1Q99NB9 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.83□□□□□ -0.35
Sf3b1Q99NB9 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
Sf3b1Q99NB9 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm3508-201ENSMUST00000186012 792 ntBASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm6905-201ENSMUST00000205729 511 ntBASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm10109-202ENSMUST00000206890 1211 ntBASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 CT009718.3-201ENSMUST00000221116 367 ntBASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Sf3b1Q99NB9 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm14724-201ENSMUST00000118400 537 ntBASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm8100-201ENSMUST00000182906 988 ntBASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm2965-201ENSMUST00000198365 343 ntBASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm9361-201ENSMUST00000198695 1507 ntBASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sf3b1Q99NB9 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm43081-201ENSMUST00000199082 1380 ntBASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sf3b1Q99NB9 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 76 ms