Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm27046-201ENSMUST00000182160 463 ntBASIC11.78□□□□□ -0.52
Msh4Q99MT2 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Gm8712-201ENSMUST00000221090 701 ntBASIC11.78□□□□□ -0.52
Msh4Q99MT2 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Rassf8-202ENSMUST00000058538 1131 ntBASIC11.78□□□□□ -0.52
Msh4Q99MT2 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.78□□□□□ -0.52
Msh4Q99MT2 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Msh4Q99MT2 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.77□□□□□ -0.52
Msh4Q99MT2 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Msh4Q99MT2 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.77□□□□□ -0.53
Msh4Q99MT2 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.77□□□□□ -0.53
Msh4Q99MT2 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Gm3096-201ENSMUST00000185770 364 ntBASIC11.77□□□□□ -0.53
Msh4Q99MT2 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Msh4Q99MT2 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm24830-201ENSMUST00000102024 166 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm25890-201ENSMUST00000177643 165 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm22614-201ENSMUST00000178300 165 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.76□□□□□ -0.53
Msh4Q99MT2 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms