Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Scrt1Q99M85 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gm43321-201ENSMUST00000198897 2409 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gm18893-201ENSMUST00000198416 943 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gm19931-201ENSMUST00000198920 368 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 AC174797.2-202ENSMUST00000225729 568 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 AC099645.1-201ENSMUST00000226476 1105 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gm18626-201ENSMUST00000221512 1409 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC10.63□□□□□ -0.71
Scrt1Q99M85 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Zkscan3-207ENSMUST00000223831 2101 ntBASIC10.63□□□□□ -0.71
Scrt1Q99M85 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Scrt1Q99M85 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 AC157950.1-201ENSMUST00000217561 2168 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm29155-201ENSMUST00000185910 269 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm43365-201ENSMUST00000196522 2106 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm42937-201ENSMUST00000197360 752 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 AC124457.1-201ENSMUST00000198845 120 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm6781-201ENSMUST00000038304 1242 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC10.62□□□□□ -0.71
Scrt1Q99M85 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Scrt1Q99M85 Arhgef3-204ENSMUST00000225949 3198 ntBASIC10.62□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms