Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm27530-201ENSMUST00000184096 98 ntBASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 AU022133-201ENSMUST00000200601 873 ntBASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm270-201ENSMUST00000223010 976 ntBASIC13.42□□□□□ -0.26
Trim47Q8C0E3 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trim47Q8C0E3 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gm12266-201ENSMUST00000120311 962 ntBASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 B9d1os-201ENSMUST00000137010 674 ntBASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gm19208-201ENSMUST00000213861 912 ntBASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 AC173482.6-201ENSMUST00000225889 1741 ntBASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trim47Q8C0E3 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 AC126257.1-201ENSMUST00000213195 1536 ntBASIC13.4□□□□□ -0.26
Trim47Q8C0E3 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm11509-201ENSMUST00000117358 325 ntBASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm18038-201ENSMUST00000197900 485 ntBASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm43068-201ENSMUST00000201095 1273 ntBASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trim47Q8C0E3 Gm37348-201ENSMUST00000193104 1789 ntBASIC13.4□□□□□ -0.26
Trim47Q8C0E3 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.39□□□□□ -0.27
Trim47Q8C0E3 Gm10152-201ENSMUST00000193475 1344 ntBASIC13.39□□□□□ -0.27
Trim47Q8C0E3 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim47Q8C0E3 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Trim47Q8C0E3 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms