Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm26448-201ENSMUST00000082446 203 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm12036-201ENSMUST00000120008 530 ntBASIC14.22□□□□□ -0.13
Trim56Q80VI1 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm3332-201ENSMUST00000189337 928 ntBASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm42629-201ENSMUST00000199063 1102 ntBASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gm44831-201ENSMUST00000208469 2989 ntBASIC14.22□□□□□ -0.13
Trim56Q80VI1 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.22□□□□□ -0.13
Trim56Q80VI1 AC153929.1-201ENSMUST00000219009 303 ntBASIC14.22□□□□□ -0.13
Trim56Q80VI1 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim56Q80VI1 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC14.21□□□□□ -0.13
Trim56Q80VI1 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Mir7677-201ENSMUST00000184226 67 ntBASIC14.21□□□□□ -0.13
Trim56Q80VI1 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm43184-201ENSMUST00000197247 542 ntBASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Mir219a-1-201ENSMUST00000083621 110 ntBASIC14.21□□□□□ -0.13
Trim56Q80VI1 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim56Q80VI1 Gm7537-201ENSMUST00000221660 1414 ntBASIC14.21□□□□□ -0.13
Trim56Q80VI1 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim56Q80VI1 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Trim56Q80VI1 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Trim56Q80VI1 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim56Q80VI1 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim56Q80VI1 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms