Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Snrnp40Q6PE01 AC126257.1-201ENSMUST00000213195 1536 ntBASIC10.63□□□□□ -0.71
Snrnp40Q6PE01 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Snrnp40Q6PE01 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Snrnp40Q6PE01 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Snrnp40Q6PE01 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm37859-201ENSMUST00000195529 2173 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm37131-201ENSMUST00000192502 1561 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm7278-201ENSMUST00000119836 1401 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm37513-201ENSMUST00000194830 2268 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm38378-201ENSMUST00000195153 2268 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm16166-201ENSMUST00000118291 787 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm24398-201ENSMUST00000157870 109 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm24844-201ENSMUST00000158679 127 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm37458-201ENSMUST00000194055 410 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm43852-201ENSMUST00000202098 917 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm44158-201ENSMUST00000203881 505 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm44882-201ENSMUST00000205702 802 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm45594-201ENSMUST00000211717 241 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 AC124433.1-201ENSMUST00000224483 1063 ntBASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Snrnp40Q6PE01 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 AC129931.1-201ENSMUST00000228865 1861 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm11801-201ENSMUST00000117807 746 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm14942-201ENSMUST00000119642 336 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm14219-201ENSMUST00000120414 288 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm8531-201ENSMUST00000188319 893 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm43692-201ENSMUST00000198236 1062 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 CT009536.2-201ENSMUST00000225370 665 ntBASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC10.61□□□□□ -0.71
Snrnp40Q6PE01 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 94.5 ms