Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col18a1P39061 Gm42499-201ENSMUST00000196193 1412 ntBASIC15.6■□□□□ 0.09
Col18a1P39061 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC15.6■□□□□ 0.09
Col18a1P39061 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC15.6■□□□□ 0.09
Col18a1P39061 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 AU015836-205ENSMUST00000163458 911 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Col18a1P39061 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC15.6■□□□□ 0.09
Col18a1P39061 Gm7765-201ENSMUST00000182585 974 ntBASIC15.6■□□□□ 0.09
Col18a1P39061 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC15.6■□□□□ 0.09
Col18a1P39061 5033404E19Rik-202ENSMUST00000194748 1065 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Ighv1-70-201ENSMUST00000196509 351 ntBASIC15.6■□□□□ 0.09
Col18a1P39061 Gm9644-201ENSMUST00000212828 1183 ntBASIC15.6■□□□□ 0.09
Col18a1P39061 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC15.6■□□□□ 0.09
Col18a1P39061 Olfr1121-201ENSMUST00000062555 945 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Col18a1P39061 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Col18a1P39061 AC122335.2-201ENSMUST00000213901 6181 ntBASIC15.6■□□□□ 0.09
Col18a1P39061 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC15.6■□□□□ 0.09
Col18a1P39061 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC15.6■□□□□ 0.09
Col18a1P39061 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC15.6■□□□□ 0.09
Col18a1P39061 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
Col18a1P39061 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
Col18a1P39061 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Col18a1P39061 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Gm24933-201ENSMUST00000103762 110 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Gm23252-201ENSMUST00000103776 110 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC15.59■□□□□ 0.09
Col18a1P39061 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC15.59■□□□□ 0.09
Col18a1P39061 Gm26443-201ENSMUST00000179610 110 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Gm17936-201ENSMUST00000199413 988 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Gm43811-201ENSMUST00000202862 695 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Gm6478-201ENSMUST00000099450 742 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Col18a1P39061 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Col18a1P39061 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC15.59■□□□□ 0.09
Col18a1P39061 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Col18a1P39061 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Gm16537-201ENSMUST00000161529 702 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Mir6387-201ENSMUST00000184042 108 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC15.59■□□□□ 0.09
Col18a1P39061 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC15.59■□□□□ 0.09
Col18a1P39061 Ggta1-201ENSMUST00000044255 1221 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
Col18a1P39061 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Col18a1P39061 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Col18a1P39061 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Eloc-208ENSMUST00000188641 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col18a1P39061 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col18a1P39061 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Col18a1P39061 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col18a1P39061 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
Col18a1P39061 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col18a1P39061 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
Col18a1P39061 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm22495-201ENSMUST00000104492 126 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm13281-201ENSMUST00000120871 567 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC15.58■□□□□ 0.08
Col18a1P39061 2410152P15Rik-201ENSMUST00000137405 871 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm15658-201ENSMUST00000148293 574 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC15.58■□□□□ 0.08
Col18a1P39061 Cd9-ps-201ENSMUST00000174687 650 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Gm38233-201ENSMUST00000194259 807 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Gm43726-201ENSMUST00000199110 775 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm43866-201ENSMUST00000203894 839 ntBASIC15.58■□□□□ 0.08
Col18a1P39061 Mylpf-206ENSMUST00000206772 653 ntTSL 3 BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Col18a1P39061 Gm7589-201ENSMUST00000085631 534 ntBASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms