Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm21358-201ENSMUST00000191645 1659 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Col2a1P28481 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 Gm37269-201ENSMUST00000193906 1891 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Gm11500-201ENSMUST00000118237 601 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Gm14395-201ENSMUST00000120494 563 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Col2a1P28481 Gm2875-201ENSMUST00000211333 360 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC13.54□□□□□ -0.24
Col2a1P28481 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Col2a1P28481 Gm23105-201ENSMUST00000083719 134 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.54□□□□□ -0.24
Col2a1P28481 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Col2a1P28481 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col2a1P28481 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Gm43773-201ENSMUST00000198548 2162 ntBASIC13.53□□□□□ -0.24
Col2a1P28481 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Gm8146-201ENSMUST00000192106 1847 ntBASIC13.53□□□□□ -0.24
Col2a1P28481 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Col2a1P28481 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Gm25766-201ENSMUST00000104101 131 ntBASIC13.53□□□□□ -0.24
Col2a1P28481 Gm12247-201ENSMUST00000117585 670 ntBASIC13.53□□□□□ -0.24
Col2a1P28481 Gm11700-201ENSMUST00000119409 403 ntBASIC13.53□□□□□ -0.24
Col2a1P28481 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC13.53□□□□□ -0.24
Col2a1P28481 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC13.53□□□□□ -0.24
Col2a1P28481 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC13.53□□□□□ -0.24
Col2a1P28481 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Col2a1P28481 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col2a1P28481 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.24
Col2a1P28481 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Col2a1P28481 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Col2a1P28481 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC13.52□□□□□ -0.24
Col2a1P28481 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col2a1P28481 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.25
Col2a1P28481 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC13.52□□□□□ -0.25
Col2a1P28481 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC13.52□□□□□ -0.25
Col2a1P28481 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col2a1P28481 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC13.52□□□□□ -0.25
Col2a1P28481 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC13.52□□□□□ -0.25
Col2a1P28481 Gm42518-201ENSMUST00000196277 938 ntBASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms