Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.99□□□□□ -0.17
Col1a1P11087 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Gm24248-201ENSMUST00000157321 322 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Gm26989-201ENSMUST00000182608 749 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Gm45592-201ENSMUST00000209605 1043 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Gm4978-201ENSMUST00000071565 801 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Gm10263-201ENSMUST00000085163 300 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.99□□□□□ -0.17
Col1a1P11087 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.98□□□□□ -0.17
Col1a1P11087 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC13.98□□□□□ -0.17
Col1a1P11087 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Col1a1P11087 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Col1a1P11087 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Gm14270-201ENSMUST00000118388 846 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Gm12948-201ENSMUST00000119406 682 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC13.98□□□□□ -0.17
Col1a1P11087 Gm8451-201ENSMUST00000170338 447 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC13.98□□□□□ -0.17
Col1a1P11087 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Gm43912-201ENSMUST00000204352 538 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Mt1-202ENSMUST00000211807 1085 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Gm7536-201ENSMUST00000077389 444 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Gm5453-201ENSMUST00000080866 447 ntBASIC13.98□□□□□ -0.17
Col1a1P11087 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.98□□□□□ -0.17
Col1a1P11087 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Col1a1P11087 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col1a1P11087 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Col1a1P11087 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Col1a1P11087 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col1a1P11087 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Col1a1P11087 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Mir671-201ENSMUST00000102432 98 ntBASIC13.97□□□□□ -0.17
Col1a1P11087 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm11979-201ENSMUST00000119629 743 ntBASIC13.97□□□□□ -0.17
Col1a1P11087 Gm19015-201ENSMUST00000184002 1189 ntBASIC13.97□□□□□ -0.17
Col1a1P11087 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm7504-201ENSMUST00000201449 424 ntBASIC13.97□□□□□ -0.17
Col1a1P11087 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Col1a1P11087 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC13.97□□□□□ -0.17
Col1a1P11087 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.97□□□□□ -0.17
Col1a1P11087 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 AC093022.4-203ENSMUST00000228523 2657 ntBASIC13.97□□□□□ -0.17
Col1a1P11087 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col1a1P11087 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Col1a1P11087 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms